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<FONT color="green">001</FONT>    package edu.hawaii.myisern.model;<a name="line.1"></a>
<FONT color="green">002</FONT>    <a name="line.2"></a>
<FONT color="green">003</FONT>    import java.math.BigInteger;<a name="line.3"></a>
<FONT color="green">004</FONT>    import java.util.ArrayList;<a name="line.4"></a>
<FONT color="green">005</FONT>    import java.util.List;<a name="line.5"></a>
<FONT color="green">006</FONT>    import java.util.Map;<a name="line.6"></a>
<FONT color="green">007</FONT>    import edu.hawaii.myisern.collaborations.jaxb.Collaboration;<a name="line.7"></a>
<FONT color="green">008</FONT>    import edu.hawaii.myisern.organizations.jaxb.Organization;<a name="line.8"></a>
<FONT color="green">009</FONT>    import edu.hawaii.myisern.researchers.jaxb.Researcher;<a name="line.9"></a>
<FONT color="green">010</FONT>    <a name="line.10"></a>
<FONT color="green">011</FONT>    /**<a name="line.11"></a>
<FONT color="green">012</FONT>     * Does Sanity Check for Researchers, Organizations and Collaborations.<a name="line.12"></a>
<FONT color="green">013</FONT>     * <a name="line.13"></a>
<FONT color="green">014</FONT>     * @author Ed Kim<a name="line.14"></a>
<FONT color="green">015</FONT>     * @author Jon Lao<a name="line.15"></a>
<FONT color="green">016</FONT>     * @author Jianfei Liao<a name="line.16"></a>
<FONT color="green">017</FONT>     * @author Jared Sunouchi<a name="line.17"></a>
<FONT color="green">018</FONT>     */<a name="line.18"></a>
<FONT color="green">019</FONT>    public class MyIsernSanityCheck {  <a name="line.19"></a>
<FONT color="green">020</FONT>      <a name="line.20"></a>
<FONT color="green">021</FONT>      /** A list with all researchers. */<a name="line.21"></a>
<FONT color="green">022</FONT>      private List&lt;Researcher&gt; researchersList;<a name="line.22"></a>
<FONT color="green">023</FONT>      /** A list with all organizations. */<a name="line.23"></a>
<FONT color="green">024</FONT>      private List&lt;Organization&gt; organizationsList;<a name="line.24"></a>
<FONT color="green">025</FONT>      /** A list with all collaborations. */<a name="line.25"></a>
<FONT color="green">026</FONT>      private List&lt;Collaboration&gt; collaborationsList;<a name="line.26"></a>
<FONT color="green">027</FONT>      /** A map that associates every researcher with an unique ID. */<a name="line.27"></a>
<FONT color="green">028</FONT>      private Map&lt;String, Researcher&gt; researchersMap;<a name="line.28"></a>
<FONT color="green">029</FONT>      /** A map that associates every organization with an unique ID. */<a name="line.29"></a>
<FONT color="green">030</FONT>      private Map&lt;String, Organization&gt; organizationsMap;<a name="line.30"></a>
<FONT color="green">031</FONT>      /** A string for " field is empty or invalid format. ". */<a name="line.31"></a>
<FONT color="green">032</FONT>      private static final String INVALID_FIELD = " field is empty or invalid format. ";<a name="line.32"></a>
<FONT color="green">033</FONT>      /** A string for " is not in the database. ". */<a name="line.33"></a>
<FONT color="green">034</FONT>      private static final String INVALID_REFERENCE = " is not in the database. ";<a name="line.34"></a>
<FONT color="green">035</FONT>      /** A string for " is not in proper range. ". */<a name="line.35"></a>
<FONT color="green">036</FONT>      private static final String INVALID_YEAR = " is not in proper range. ";<a name="line.36"></a>
<FONT color="green">037</FONT>      <a name="line.37"></a>
<FONT color="green">038</FONT>      /**<a name="line.38"></a>
<FONT color="green">039</FONT>       * Create a new instance of the checker.<a name="line.39"></a>
<FONT color="green">040</FONT>       * <a name="line.40"></a>
<FONT color="green">041</FONT>       * @param model The MyISERN instance that will be checked.<a name="line.41"></a>
<FONT color="green">042</FONT>       */<a name="line.42"></a>
<FONT color="green">043</FONT>      public MyIsernSanityCheck(MyIsernModel model) {<a name="line.43"></a>
<FONT color="green">044</FONT>        // get all researchers, organizations, and collaborations as lists<a name="line.44"></a>
<FONT color="green">045</FONT>        this.researchersList = model.getResearchersList();<a name="line.45"></a>
<FONT color="green">046</FONT>        this.organizationsList = model.getOrganizationsList();<a name="line.46"></a>
<FONT color="green">047</FONT>        this.collaborationsList = model.getCollaborationsList();<a name="line.47"></a>
<FONT color="green">048</FONT>        // get all researchers, organizations, and collaborations as maps<a name="line.48"></a>
<FONT color="green">049</FONT>        this.researchersMap = model.getResearchersMap();<a name="line.49"></a>
<FONT color="green">050</FONT>        this.organizationsMap = model.getOrganizationsMap();<a name="line.50"></a>
<FONT color="green">051</FONT>        //this.collaborationsMap = model.getCollaborationsMap();<a name="line.51"></a>
<FONT color="green">052</FONT>        <a name="line.52"></a>
<FONT color="green">053</FONT>      }<a name="line.53"></a>
<FONT color="green">054</FONT>      <a name="line.54"></a>
<FONT color="green">055</FONT>      /**<a name="line.55"></a>
<FONT color="green">056</FONT>       * Generates error list for invalid organization in researcher.<a name="line.56"></a>
<FONT color="green">057</FONT>       * <a name="line.57"></a>
<FONT color="green">058</FONT>       * @return list of the errors.<a name="line.58"></a>
<FONT color="green">059</FONT>       */<a name="line.59"></a>
<FONT color="green">060</FONT>      public synchronized List&lt;SanityError&gt; invalidOrganizationInResearcher() {<a name="line.60"></a>
<FONT color="green">061</FONT>        List&lt;SanityError&gt; errors = new ArrayList&lt;SanityError&gt;();<a name="line.61"></a>
<FONT color="green">062</FONT>        <a name="line.62"></a>
<FONT color="green">063</FONT>        for (Researcher r : this.researchersList) {<a name="line.63"></a>
<FONT color="green">064</FONT>          String org = r.getOrganization();<a name="line.64"></a>
<FONT color="green">065</FONT>          // if organization is not null and doesn't exist in the data map.<a name="line.65"></a>
<FONT color="green">066</FONT>          if (org != null &amp;&amp; !this.organizationsMap.containsKey(org.replace(' ', '_'))) {<a name="line.66"></a>
<FONT color="green">067</FONT>            //errors.add(createErrorEntry(r.getName(), org, 1));<a name="line.67"></a>
<FONT color="green">068</FONT>            errors.add(new SanityError(r.getName(), org, INVALID_REFERENCE));<a name="line.68"></a>
<FONT color="green">069</FONT>          }          <a name="line.69"></a>
<FONT color="green">070</FONT>        }    <a name="line.70"></a>
<FONT color="green">071</FONT>        return errors;<a name="line.71"></a>
<FONT color="green">072</FONT>      }<a name="line.72"></a>
<FONT color="green">073</FONT>        <a name="line.73"></a>
<FONT color="green">074</FONT>      /**<a name="line.74"></a>
<FONT color="green">075</FONT>       * Generate error list for invalid affiliated researchers in organization.<a name="line.75"></a>
<FONT color="green">076</FONT>       * <a name="line.76"></a>
<FONT color="green">077</FONT>       * @return list of the errors.<a name="line.77"></a>
<FONT color="green">078</FONT>       */<a name="line.78"></a>
<FONT color="green">079</FONT>      public synchronized List&lt;SanityError&gt; invalidAffiliatedResearchersInOrganization() {<a name="line.79"></a>
<FONT color="green">080</FONT>        List&lt;SanityError&gt; errors = new ArrayList&lt;SanityError&gt;();<a name="line.80"></a>
<FONT color="green">081</FONT>        for (Organization o : this.organizationsList) {<a name="line.81"></a>
<FONT color="green">082</FONT>          List&lt;String&gt; aRList = o.getAffiliatedResearchers().getAffiliatedResearcher();<a name="line.82"></a>
<FONT color="green">083</FONT>          for (String ar : aRList) {<a name="line.83"></a>
<FONT color="green">084</FONT>            // if affiliated researcher is not null and doesn't exist in map.<a name="line.84"></a>
<FONT color="green">085</FONT>            if (ar != null &amp;&amp; !ar.equals("")<a name="line.85"></a>
<FONT color="green">086</FONT>                &amp;&amp; !this.researchersMap.containsKey(ar.replace(' ', '_'))) {<a name="line.86"></a>
<FONT color="green">087</FONT>              errors.add(new SanityError(o.getName(), ar, INVALID_REFERENCE));<a name="line.87"></a>
<FONT color="green">088</FONT>            }<a name="line.88"></a>
<FONT color="green">089</FONT>          }<a name="line.89"></a>
<FONT color="green">090</FONT>        }    <a name="line.90"></a>
<FONT color="green">091</FONT>        return errors;<a name="line.91"></a>
<FONT color="green">092</FONT>      }<a name="line.92"></a>
<FONT color="green">093</FONT>      <a name="line.93"></a>
<FONT color="green">094</FONT>      /**<a name="line.94"></a>
<FONT color="green">095</FONT>       * Generate error list for invalid organization in collaboration.<a name="line.95"></a>
<FONT color="green">096</FONT>       * <a name="line.96"></a>
<FONT color="green">097</FONT>       * @return list of the errors.<a name="line.97"></a>
<FONT color="green">098</FONT>       */<a name="line.98"></a>
<FONT color="green">099</FONT>      public synchronized List&lt;SanityError&gt; invalidOrganizationsInCollaboration() {<a name="line.99"></a>
<FONT color="green">100</FONT>        List&lt;SanityError&gt; errors = new ArrayList&lt;SanityError&gt;();<a name="line.100"></a>
<FONT color="green">101</FONT>        for (Collaboration c : this.collaborationsList) {<a name="line.101"></a>
<FONT color="green">102</FONT>          List&lt;String&gt; oList = c.getCollaboratingOrganizations().getCollaboratingOrganization();<a name="line.102"></a>
<FONT color="green">103</FONT>          for (String o : oList) {<a name="line.103"></a>
<FONT color="green">104</FONT>            if (o != null &amp;&amp; !this.organizationsMap.containsKey(o.replace(' ', '_'))) {<a name="line.104"></a>
<FONT color="green">105</FONT>              errors.add(new SanityError(c.getName(), o, INVALID_REFERENCE));          <a name="line.105"></a>
<FONT color="green">106</FONT>            }<a name="line.106"></a>
<FONT color="green">107</FONT>          }<a name="line.107"></a>
<FONT color="green">108</FONT>        }<a name="line.108"></a>
<FONT color="green">109</FONT>        return errors;<a name="line.109"></a>
<FONT color="green">110</FONT>      }<a name="line.110"></a>
<FONT color="green">111</FONT>      <a name="line.111"></a>
<FONT color="green">112</FONT>      /**<a name="line.112"></a>
<FONT color="green">113</FONT>       * Generate error list for invalid year range in collaboration.<a name="line.113"></a>
<FONT color="green">114</FONT>       * <a name="line.114"></a>
<FONT color="green">115</FONT>       * @return list of the errors.<a name="line.115"></a>
<FONT color="green">116</FONT>       */<a name="line.116"></a>
<FONT color="green">117</FONT>      public synchronized List&lt;SanityError&gt; invalidYearsInCollaboration() {<a name="line.117"></a>
<FONT color="green">118</FONT>        List&lt;SanityError&gt; errors = new ArrayList&lt;SanityError&gt;();<a name="line.118"></a>
<FONT color="green">119</FONT>        for (Collaboration c : this.collaborationsList) {<a name="line.119"></a>
<FONT color="green">120</FONT>          List&lt;BigInteger&gt; yearList = c.getYears().getYear();<a name="line.120"></a>
<FONT color="green">121</FONT>          for (BigInteger year : yearList) {<a name="line.121"></a>
<FONT color="green">122</FONT>            if (year.intValue() &lt; 1990 || year.intValue() &gt; 2010) {          <a name="line.122"></a>
<FONT color="green">123</FONT>              errors.add(new SanityError(c.getName(), year.toString(), INVALID_YEAR));<a name="line.123"></a>
<FONT color="green">124</FONT>            }<a name="line.124"></a>
<FONT color="green">125</FONT>          }<a name="line.125"></a>
<FONT color="green">126</FONT>        }    <a name="line.126"></a>
<FONT color="green">127</FONT>        return errors;<a name="line.127"></a>
<FONT color="green">128</FONT>      }<a name="line.128"></a>
<FONT color="green">129</FONT>      <a name="line.129"></a>
<FONT color="green">130</FONT>      /**<a name="line.130"></a>
<FONT color="green">131</FONT>       * Generate error list for empty organization in researcher.<a name="line.131"></a>
<FONT color="green">132</FONT>       * <a name="line.132"></a>
<FONT color="green">133</FONT>       * @return list of the errors.<a name="line.133"></a>
<FONT color="green">134</FONT>       */<a name="line.134"></a>
<FONT color="green">135</FONT>      public synchronized List&lt;SanityError&gt; emptyOrganizationInResearcher() {<a name="line.135"></a>
<FONT color="green">136</FONT>        List&lt;SanityError&gt; errors = new ArrayList&lt;SanityError&gt;();<a name="line.136"></a>
<FONT color="green">137</FONT>        // this part actually can be combined with the invalid check part.<a name="line.137"></a>
<FONT color="green">138</FONT>        for (Researcher r : this.researchersList) {<a name="line.138"></a>
<FONT color="green">139</FONT>          if (r.getOrganization() == null || r.getOrganization().trim().isEmpty()) {<a name="line.139"></a>
<FONT color="green">140</FONT>            errors.add(new SanityError(r.getName(), "Organization", INVALID_FIELD));        <a name="line.140"></a>
<FONT color="green">141</FONT>          }<a name="line.141"></a>
<FONT color="green">142</FONT>        }       <a name="line.142"></a>
<FONT color="green">143</FONT>        return errors;<a name="line.143"></a>
<FONT color="green">144</FONT>      }<a name="line.144"></a>
<FONT color="green">145</FONT>          <a name="line.145"></a>
<FONT color="green">146</FONT>      /**<a name="line.146"></a>
<FONT color="green">147</FONT>       * Generates error list for empty affiliated researchers in organization.<a name="line.147"></a>
<FONT color="green">148</FONT>       * <a name="line.148"></a>
<FONT color="green">149</FONT>       * @return list of the errors.<a name="line.149"></a>
<FONT color="green">150</FONT>       */<a name="line.150"></a>
<FONT color="green">151</FONT>      public synchronized List&lt;SanityError&gt; emptyAffiliatedResearchersInOrganization() {<a name="line.151"></a>
<FONT color="green">152</FONT>        List&lt;SanityError&gt; errors = new ArrayList&lt;SanityError&gt;();<a name="line.152"></a>
<FONT color="green">153</FONT>        // this part actually can be combined with the invalid check part.<a name="line.153"></a>
<FONT color="green">154</FONT>        for (Organization o : this.organizationsList) {<a name="line.154"></a>
<FONT color="green">155</FONT>          List&lt;String&gt; aRList = o.getAffiliatedResearchers().getAffiliatedResearcher();<a name="line.155"></a>
<FONT color="green">156</FONT>          if (aRList == null || aRList.isEmpty()) {<a name="line.156"></a>
<FONT color="green">157</FONT>            errors.add(new SanityError(o.getName(), "Affiliated Researchers", INVALID_FIELD));        <a name="line.157"></a>
<FONT color="green">158</FONT>          }<a name="line.158"></a>
<FONT color="green">159</FONT>        }<a name="line.159"></a>
<FONT color="green">160</FONT>        return errors;<a name="line.160"></a>
<FONT color="green">161</FONT>      }<a name="line.161"></a>
<FONT color="green">162</FONT>      <a name="line.162"></a>
<FONT color="green">163</FONT>      /**<a name="line.163"></a>
<FONT color="green">164</FONT>       * Generates error list for empty organization in collaboration.<a name="line.164"></a>
<FONT color="green">165</FONT>       * <a name="line.165"></a>
<FONT color="green">166</FONT>       * @return list of the errors.<a name="line.166"></a>
<FONT color="green">167</FONT>       */<a name="line.167"></a>
<FONT color="green">168</FONT>      public synchronized List&lt;SanityError&gt; emptyOrganizationsInCollaboration() {<a name="line.168"></a>
<FONT color="green">169</FONT>        List&lt;SanityError&gt; errors = new ArrayList&lt;SanityError&gt;();<a name="line.169"></a>
<FONT color="green">170</FONT>        // this part actually can be combined with the invalid check part.<a name="line.170"></a>
<FONT color="green">171</FONT>        for (Collaboration c : this.collaborationsList) {<a name="line.171"></a>
<FONT color="green">172</FONT>          List&lt;String&gt; oList = c.getCollaboratingOrganizations().getCollaboratingOrganization();<a name="line.172"></a>
<FONT color="green">173</FONT>          if (oList == null || oList.isEmpty()) {<a name="line.173"></a>
<FONT color="green">174</FONT>            errors.add(new SanityError(c.getName(), "Collaborating Organizations", INVALID_FIELD));<a name="line.174"></a>
<FONT color="green">175</FONT>          }<a name="line.175"></a>
<FONT color="green">176</FONT>        }<a name="line.176"></a>
<FONT color="green">177</FONT>        return errors;<a name="line.177"></a>
<FONT color="green">178</FONT>      }<a name="line.178"></a>
<FONT color="green">179</FONT>    }<a name="line.179"></a>




























































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